$ msp2db --msp_pth [msp file or directory of msp files] --source [name of source of msp e.g. massbank] -out_pth [out dir]
$ msp2db --help
usage: PROG [-h] -m MSP_PTH -s SOURCE [-o OUT_PTH] [-t TYPE] [-d] [-l MSLEVEL]
[-c CHUNK] [-x SCHEMA]
Convert msp to SQLite or MySQL database
optional arguments:
-h, --help show this help message and exit
-m MSP_PTH, --msp_pth MSP_PTH
path to the MSP file (or directory of msp files)
-s SOURCE, --source SOURCE
Name of data source (e.g. MassBank, LipidBlast)
-o OUT_PTH, --out_pth OUT_PTH
file path for SQLite database
-t TYPE, --db_type TYPE
database type [mysql, sqlite]
-d, --delete_tables delete tables
-l MSLEVEL, --mslevel MSLEVEL
ms level of fragmentation if not detailed in msp file
-c CHUNK, --chunk CHUNK
Chunks of spectra to parse data (useful to control
memory usage)
-x SCHEMA, --schema SCHEMA
Type of schema used (by default is "mona" msp style
but can use "massbank" style)
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